Quantum algebra symmetry of the ASEP with second-class particles

We consider a two-component asymmetric simple exclusion process (ASEP) on a finite lattice with reflecting boundary conditions. For this process, which is equivalent to the ASEP with second-class particles, we construct the representation matrices of the quantum algebra $U_q[\mathfrak{gl}(3)]$ that commute with the generator. As a byproduct we prove reversibility and obtain in explicit form the reversible measure. A review of the algebraic techniques used in the proofs is given.Comment: 23 pages, presented at conference Particle systems and PDE's - III, 17-19 Dec 2014, Braga, Portuga

Transition probabilities and dynamic structure factor in the ASEP conditioned on strong flux

We consider the asymmetric simple exclusion processes (ASEP) on a ring constrained to produce an atypically large flux, or an extreme activity. Using quantum free fermion techniques we find the time-dependent conditional transition probabilities and the exact dynamical structure factor under such conditioned dynamics. In the thermodynamic limit we obtain the explicit scaling form. This gives a direct proof that the dynamical exponent in the extreme current regime is $z=1$ rather than the KPZ exponent $z=3/2$ which characterizes the ASEP in the regime of typical currents. Some of our results extend to the activity in the partially asymmetric simple exclusion process, including the symmetric case.Comment: 16 pages, 2 figure

RNA polymerase interactions and elongation rate

We show that non-steric molecular interactions between RNA polymerase (RNAP) motors that move simultaneously on the same DNA track determine strongly the kinetics of transcription elongation. With a focus on the role of collisions and cooperation, we introduce a stochastic model that allows for the exact analytical computation of the stationary properties of transcription elongation as a function of RNAP density, their interaction strength, nucleoside triphosphate concentration, and rate of pyrophosphate release. Cooperative pushing, i.e., an enhancement of the average RNAP velocity and elongation rate, arises due to stochastic pushing. This cooperative effect cannot be explained by steric hindrance alone but requires a sufficiently strong molecular repulsion. It disappears beyond a critical RNAP density, above which jamming due to collisions takes over. For strong stochastic blocking the cooperative pushing is suppressed at low RNAP densities, but a reappears at higher densities.Comment: 26 pages, 6 figure

Microscopic structure of shocks and antishocks in the ASEP conditioned on low current

We study the time evolution of the ASEP on a one-dimensional torus with $L$ sites, conditioned on an atypically low current up to a finite time $t$. For a certain one-parameter family of initial measures with a shock we prove that the shock position performs a biased random walk on the torus and that the measure seen from the shock position remains invariant. We compute explicitly the transition rates of the random walk. For the large scale behaviour this result suggests that there is an atypically low current such that the optimal density profile that realizes this current is a hyperbolic tangent with a travelling shock discontinuity. For an atypically low local current across a single bond of the torus we prove that a product measure with a shock at an arbitrary position and an antishock at the conditioned bond remains a convex combination of such measures at all times which implies that the antishock remains microscopically stable under the locally conditioned dynamics. We compute the coefficients of the convex combinations.Comment: 20 papes, 4 figure

Infinite reflections of shock fronts in driven diffusive systems with two species

Interaction of a domain wall with boundaries of a system is studied for a class of stochastic driven particle models. Reflection maps are introduced for the description of this process. We show that, generically, a domain wall reflects infinitely many times from the boundaries before a stationary state can be reached. This is in an evident contrast with one-species models where the stationary density is attained after just one reflection.Comment: 11 pages, 8 eps figs, to appearin JPhysA 01.200

Self-Duality for the Two-Component Asymmetric Simple Exclusion Process

We study a two-component asymmetric simple exclusion process (ASEP) that is equivalent to the ASEP with second-class particles. We prove self-duality with respect to a family of duality functions which are shown to arise from the reversible measures of the process and the symmetry of the generator under the quantum algebra $U_q[\mathfrak{gl}_3]$. We construct all invariant measures in explicit form and discuss some of their properties. We also prove a sum rule for the duality functions.Comment: 27 page

Green functions for the TASEP with sublattice parallel update

We consider the totally asymmetric simple exclusion process (TASEP) in discrete time with the sublattice parallel dynamics describing particles moving to the right on the one-dimensional infinite chain with equal hoping probabilities. Using sequentially two mappings, we show that the model is equivalent to the TASEP with the backward-ordered sequential update in the case when particles start and finish their motion not simultaneously. The Green functions are obtained exactly in a determinant form for different initial and final conditions.Comment: 11 pages, 4 figure

Cross border Classical Swine Fever control: Improving Dutch and German crisis management systems by an integrated public-private approach

The objective of this research approach is to analyse in which ways crisis management measures against Classical Swine Fever (CSF) can be improved by a public private cross border model. A core activity contains the analysis of information and communication systems: In a case study it has been empirically analysed if a sufficient supply of public and private information enables crisis managers at both sides of the Dutch-German border area to take decisions about CSF control more efficient. At the end of this approach a new crisis management model had been developed. One of the most important aspects thereby is the assessment of data: (1) within private quality management systems in normal times according to the benefit for public management tasks in times of crisis and (2) within public crisis management systems according to the benefit for cross-border CSF-control activities. To this effect two different methodological approaches have been combined within the model: (1) a method to identify and illustrate public actors and their options in crisis management decision making and (2) a system of communication and information exchange between public and private as well as Dutch and German actors (engage& exchange model) which permit to collect and to evaluate data in addition for a predefined time period are activated

Why spontaneous symmetry breaking disappears in a bridge system with PDE-friendly boundaries

We consider a driven diffusive system with two types of particles, A and B, coupled at the ends to reservoirs with fixed particle densities. To define stochastic dynamics that correspond to boundary reservoirs we introduce projection measures. The stationary state is shown to be approached dynamically through an infinite reflection of shocks from the boundaries. We argue that spontaneous symmetry breaking observed in similar systems is due to placing effective impurities at the boundaries and therefore does not occur in our system. Monte-Carlo simulations confirm our results.Comment: 24 pages, 7 figure